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  • ExperimentSetReplicate115
    • Project
    Lab
    Experiment Type
  • FISH
  • multiplexed FISH115
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
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    Tissue Source
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  • localizations1
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    4 Common Properties
     Experiment Category
    Microscopy
     Set Type
    Replicate
     Status
    Released
     Commendations
    No value
    115 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESO41DW4D
    multiplexed FISH
    IMR-90
    Genome-scale imaging in IMR90 cells
    DNA-MERFISH of 1041 genomic loci (alpha-amanitin treated)
    Target
    Chromosomes, region
    Xiaowei Zhuang, HARVARD
    4DNES5C3XVFP
    multiplexed FISH
    IMR-90
    Genome-scale imaging in IMR90 cells
    DNA-MERFISH + RNA-MERFISH of 1137 genes
    Target
    Chromosomes, transcript, region
    Xiaowei Zhuang, HARVARD
    4DNES5S9ND9I
    multiplexed FISH
    IMR-90
    Genome-scale imaging in IMR90 cells
    DNA-MERFISH of 1041 genomic loci
    Target
    Chromosomes, region
    Xiaowei Zhuang, HARVARD
    4DNESWTEQEBQ
    multiplexed FISH
    R1 mESC line
    Multiplexed FISH in R1 mESCs
    Non-Targeting control
    Target
    40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESSKEUB9C
    multiplexed FISH
    R1 mESC line
    Multiplexed FISH in R1 mESCs
    7.5-kb USP Prdm8
    Target
    40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESPB3DGGV
    multiplexed FISH
    R1 mESC line
    Multiplexed FISH in R1 mESCs
    33-kb USF Fgf5
    Target
    40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESAF7ROIW
    multiplexed FISH
    whole fruit fly
    Multiplexed FISH in Drosophila embryos
    Nuclear cycle 14 (nc14) of developmental stage
    Target
    34 oligos in dpp locus (fruit fly), Chromosomes
    Nollmann Marcelo
    4DNESJ2DKV9F
    multiplexed FISH
    whole fruit fly
    Multiplexed FISH in Drosophila embryos
    Nuclear cycle 12 (nc12) of developmental stage
    Target
    34 oligos in dpp locus (fruit fly), Chromosomes
    Nollmann Marcelo
    4DNES44GBU46
    multiplexed FISH
    ES-E14TG2a
    Multiplexed FISH in mouse ESC-E14
    ORCA + RNA-FISH for 44 SEs 15-kb resolution
    Target
    374 genomic regions, 21 transcripts
    Alistair Boettiger, STANFORD
    4DNESABI2R6T
    multiplexed FISH
    ES-E14TG2a
    Multiplexed FISH in mouse ESC-E14
    ORCA for 376 SEs 15-kb resolution
    Target
    374 genomic regions
    Alistair Boettiger, STANFORD
    4DNESPE924IP
    multiplexed FISH
    primary motor cortex
    Chromatin tracing in mouse primary motor cortex
    Mouse primary motor cortex - mecp2 KO
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein
    Xiaowei Zhuang, HARVARD
    4DNESMTNNB3N
    multiplexed FISH
    primary motor cortex
    Chromatin tracing in mouse primary motor cortex
    Mouse primary motor cortex - Wild type
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse)
    Xiaowei Zhuang, HARVARD
    4DNESNXGTR38
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chrX (Xi) in human IMR90 cells
    Target
    20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
    Siyuan Wang, YALE
    4DNESONPGYU9
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chrX (Xa) in human IMR90 cells
    Target
    20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
    Siyuan Wang, YALE
    4DNESR9M2CET
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chr22 in human IMR90 cells
    Target
    14 TADs on Chr22 #1-14, 13 TADs on Chr22 #15-27, 27 TADs on Chr22 #1-27
    Siyuan Wang, YALE
    4DNESC1DDSAH
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chr21 in human IMR90 cells
    Target
    17 TADs on Chr21 #1-17, 17 TADs on Chr21 #18-34, 34 TADs on Chr21 #1-34
    Siyuan Wang, YALE
    4DNESFLAEE5P
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chr20 in human IMR90 cells
    Target
    15 TADs on Chr20 #1-15, 15 TADs on Chr20 #15-30, 30 TADs on Chr20 #1-30
    Siyuan Wang, YALE
    4DNESDSVRJBX
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESCJ8M34U
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESA6RWUVI
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESQFTK11H
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESWLIGBX4
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESCTENQBB
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNES5ZXOL2B
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 4iLAF+tMEKi
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESKP8EO7E
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE