16 fewer sets in 4DN-only Data.
Included Properties
Data Type
Project
Lab
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Set Type
assay_subclass_short
Total Reads
Status
Commendations
Warnings
2 Common Properties
Experiment Category
Sequencing
Experiment Type
Hi-C
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
heart left ventricle
in situ Hi-C on primary human cardiomyocytes
left ventricle - donor 01199
Enzyme
DpnII
in situ Hi-C
heart left atrium
in situ Hi-C on primary human cardiomyocytes
left atrium - donor 01199
Enzyme
DpnII
in situ Hi-C
scid.adh
Hi-C on Scid.adh cells
CRISPR modified- Knockout tcf7
Enzyme
Arima - A1, A2
in situ Hi-C
cerebellum - PND 22
Hi-C on mouse cerebellar tissue
PND 22
Enzyme
MboI
in situ Hi-C
cerebellum - PND 6
Hi-C on mouse cerebellar tissue
PND 6
Enzyme
MboI
Micro-C
H1-hESC (Tier 1) differentiated to definitive endoderm
Micro-C on H1-DE cells - protocol variations
Formaldehyde+DSG, H1-DE (Tier 1)
Enzyme
MNase
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DpnII, HFFc6 (Tier 1)
Enzyme
DpnII
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI and DpnII, HFFc6 (Tier 1)
Enzyme
DdeI and DpnII
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI, HFFc6, (Tier 1)
Enzyme
DdeI
in situ Hi-C
H1-hESC (Tier 1) differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, DpnII, H1-DE (Tier 1)
Enzyme
DpnII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC (Tier 1)
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
Enzyme
DpnII
in situ Hi-C
CyT49
Hi-C on hESC differentiated to pancreatic endoderm
undifferentiated
Enzyme
MboI
in situ Hi-C
CyT49 differentiated to pancreatic endoderm
Hi-C on hESC differentiated to pancreatic endoderm
pancreatic endoderm
Enzyme
MboI
in situ Hi-C
CyT49 differentiated to endoderm of foregut
Hi-C on hESC differentiated to pancreatic endoderm
gut endoderm
Enzyme
MboI
in situ Hi-C
CyT49 differentiated to definitive endoderm
Hi-C on hESC differentiated to pancreatic endoderm
definitive endoderm
Enzyme
MboI
Micro-C
WTC-11 AAVS1-GFP C28
Hi-C and Micro-C on WTC-11 derived iPS cells
Micro-C experiments - clone 28
Enzyme
MNase
in situ Hi-C
WTC-11 AAVS1-GFP C28
Hi-C and Micro-C on WTC-11 derived iPS cells
in situ Hi-C experiments - clone 28
Enzyme
DpnII
Micro-C
WTC-11 AAVS1-GFP C6
Hi-C and Micro-C on WTC-11 derived iPS cells
Micro-C experiments - clone 6
Enzyme
MNase
in situ Hi-C
WTC-11 AAVS1-GFP C6
Hi-C and Micro-C on WTC-11 derived iPS cells
in situ Hi-C experiments - clone 6
Enzyme
DpnII
in situ Hi-C
46C with Sox1-GFP
Hi-C on mESC during neural differentiation
G0G1 neural progenitors cells (FACS sorted, Sox1-GFP+)
Enzyme
DpnII
in situ Hi-C
mESC line with Oct4-GFP
Hi-C on mESC during neural differentiation
G0G1 mESCs (FACS sorted, Oct4-GFP+)
Enzyme
DpnII
in situ Hi-C
H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiac muscle cell
Hi-C on H9 cells during cardiomyocyte differentiation
ventricular cardiomyocytes
Enzyme
MboI
in situ Hi-C
H9 with targeted integration of GFP-tagged MYL2 differentiated to primitive cardiac myocyte
Hi-C on H9 cells during cardiomyocyte differentiation
primitive cardiomyocytes
Enzyme
MboI