Data Browser
Filter & browse experiments

Included Properties

Data Type
  • ExperimentSetReplicate9
    • Dataset
  • Chromatin tracing of chrX9
    • Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Treatments
    Assay Details
    Set Type
  • Replicate9
    • Warnings
    10 Common Properties
     Project
    4DN
     Lab
    Siyuan Wang, YALE
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Human
     Publication
    Cheng Y et al. (2021) PMID:34749781
     Modifications
    No value
     Center
    OFHHD - Schatz
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESBR4BVOZ
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, untreated, open chromatin region
    Target
    28 consecutive 30-kb loci on chrX (open chromatin), XIST transcript
    Siyuan Wang, YALE
    4DNESSJUM54F
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, untreated, closed chromatin region
    Target
    28 consecutive 30-kb loci on chrX (closed chromatin), XIST transcript
    Siyuan Wang, YALE
    4DNES5XKLWKW
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, DNA methylation inhibitor
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNES73TYNAK
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, EZH2 methyltransferase inhibitor
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNES4Y519FW
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, hyper histone methylation
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNES82IH3OG
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, transcription inhibitor
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNESUDN4NP6
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, HDAC inhibitors
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNESDQV4VNJ
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, untreated
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNESTJZUP4P
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Chromatin tracing of chrX
    RPE-1 cells, untreated
    Target
    28 consecutive 30-kb loci on chrX, mH2A.1
    Siyuan Wang, YALE
    - fin -