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Included Properties

Data Type
  • ExperimentSetReplicate15
    • Dataset
  • Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion15
    • Sample
    Treatments
    Assay Details
    Set Type
  • Replicate15
    • Warnings
    15 Common Properties
     Project
    4DN
     Lab
    Alistair Boettiger, STANFORD
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample Category
    Mouse stem cell
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Hafner A et al. (2023) PMID:37146570
     Modifications
    No value
     Center
    Bintu
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESFO5OJGM
    multiplexed FISH
    ES-E14TG2a with Rad21-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    150 Mb, mESC RAD21-AID + auxin
    Target
    150-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESFQE4NCL
    multiplexed FISH
    ES-E14TG2a with Rad21-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    150 Mb, mESC RAD21-AID untreated
    Target
    150-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESV84QXGA
    multiplexed FISH
    ES-E14TG2a with CTCF-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    150 Mb, mESC CTCF-AID + auxin
    Target
    150-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESKHW5KA8
    multiplexed FISH
    ES-E14TG2a with CTCF-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    150 Mb, mESC CTCF-AID untreated
    Target
    150-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESD9724HX
    multiplexed FISH
    ES-E14TG2a
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    150 Mb, mESC untreated
    Target
    150-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNES1KEOJHX
    multiplexed FISH
    ES-E14TG2a with Rad21-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    30 Mb, mESC RAD21-AID + auxin
    Target
    30-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNES14BEOD7
    multiplexed FISH
    ES-E14TG2a with Rad21-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    30 Mb, mESC RAD21-AID untreated
    Target
    30-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESNM1I7P6
    multiplexed FISH
    ES-E14TG2a with CTCF-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    30 Mb, mESC CTCF-AID + auxin
    Target
    30-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESKIVBX1Q
    multiplexed FISH
    ES-E14TG2a with CTCF-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    30 Mb, mESC CTCF-AID untreated
    Target
    30-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESELYNUSQ
    multiplexed FISH
    ES-E14TG2a
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    30 Mb, mESC untreated
    Target
    30-Mb chr3 (mouse)
    Alistair Boettiger, STANFORD
    4DNESBH54BG2
    multiplexed FISH
    ES-E14TG2a with Rad21-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    3 Mb, mESC RAD21-AID + auxin
    Target
    3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
    Alistair Boettiger, STANFORD
    4DNESLRTOSQT
    multiplexed FISH
    ES-E14TG2a with Rad21-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    3 Mb, mESC RAD21-AID untreated
    Target
    3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
    Alistair Boettiger, STANFORD
    4DNESG62SAVA
    multiplexed FISH
    ES-E14TG2a with CTCF-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    3 Mb, mESC CTCF-AID + auxin
    Target
    3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
    Alistair Boettiger, STANFORD
    4DNESTNG39BO
    multiplexed FISH
    ES-E14TG2a with CTCF-AID
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    3 Mb, mESC CTCF-AID untreated
    Target
    3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
    Alistair Boettiger, STANFORD
    4DNESWDXDZSE
    multiplexed FISH
    ES-E14TG2a
    Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
    3 Mb, mESC untreated
    Target
    3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
    Alistair Boettiger, STANFORD
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