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10 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate10
    • Dataset
  • Chromatin tracing of 2-Mb on chr2110
    • Sample Type
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Treatments
    Assay Details
    Set Type
  • Replicate10
    • Warnings
    11 Common Properties
     Project
    External
     Lab
    Alistair Boettiger, STANFORD
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Human
     Sample Tier
    Unclassified
     Publication
    Bintu B et al. (2018) PMID:30361340
     Modifications
    No value
     Center
    External
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESABVQJTS
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:34-37 Mb in HCT116 cells cohesin-depleted after cell division
    Target
    83 consecutive 30-kb loci on chr21, Geminin, EdU labeled Chromosomes
    Alistair Boettiger, STANFORD
    4DNES67C81FH
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:34-37 Mb in HCT116 cells cohesin-depleted
    Target
    83 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNES4AGJSQY
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:34-37 Mb in HCT116 cells
    Target
    83 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNESGAO6AWG
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in HCT116 cells cohesin-depleted
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNES6ZQ6SWJ
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in HCT116 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNESL619Z5V
    multiplexed FISH
    A549
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in A549 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNEST5FUQKC
    multiplexed FISH
    K562
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in K562 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNESSXNNJUB
    multiplexed FISH
    IMR-90
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in IMR90 cells across cell cycle
    Target
    65 consecutive 30-kb loci on chr21, Geminin, Chromosomes
    Alistair Boettiger, STANFORD
    4DNES4XDIR9E
    multiplexed FISH
    IMR-90
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in IMR90 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNES97DWLA6
    multiplexed FISH
    IMR-90
    Chromatin tracing of 2-Mb on chr21
    Chr21:18-20 Mb (no TADs) in IMR90 cells
    Target
    65 consecutive 30-kb loci in a region without TADs on chr21
    Alistair Boettiger, STANFORD
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