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18 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate18
    • Dataset
    Organ/System
    Treatments
    Set Type
  • Replicate18
    • Dataset Group
  • HiC on sync. chicken cells18
    • Warnings
    16 Common Properties
     Project
    External
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Chicken
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Sample
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
     Tissue Source
    bursa of Fabricius
     Publication
    Gibcus JH et al. (2018) PMID:29348367
     Modifications
    No value
     Assay Details
    Enzyme: HindIII
     Center
    External
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESJWNFMOD
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sorted sync. chicken cells
    prometaphase block (60m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESXDOBP9L
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sorted sync. chicken cells
    prometaphase block (30m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESE3U35ZL
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sorted sync. chicken cells
    prometaphase (15m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES6GBBV5D
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sorted sync. chicken cells
    G2 block (0m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESOL4SYQN
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells (no 1NM-PP1 washout)
    prophase (10m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESLU4EMPB
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells (no 1NM-PP1 washout)
    prophase (7.5m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESEJT5GT5
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells (no 1NM-PP1 washout)
    G2 (5m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESQGE4YOX
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells (no 1NM-PP1 washout)
    G2 (2.5m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESGA9ZDDN
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells (no 1NM-PP1 washout)
    G2 (0m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESIR416OW
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    prometaphase (15m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESNWWIFZU
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    prophase (5m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESEQNSXSD
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    prometaphase block (60m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNEST1YQMVS
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    prometaphase block (30m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESS8PTK6F
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    prometaphase (30m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESGDXKM2I
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    prophase (10m)
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES9LEZXN7
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    G2 block
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESQ9E7KYZ
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    G2 block, elutriated
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESCR8WQLA
    Dilution Hi-C
    DT40 with random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. chicken cells
    unsorted, unsynchronized
    Enzyme
    HindIII
    Job Dekker, UMMS
    - fin -