15 fewer sets in 4DN-only Data.
Included Properties
Data Type
Lab
Dataset
Organism
Sample Type
Sample Category
Sample
Organ/System
Tissue Source
Publication
Assay Details
Center
Set Type
Dataset Group
Warnings
8 Common Properties
Project
External
Experiment Category
Sequencing
Experiment Type
Hi-C
Sample Tier
Unclassified
Modifications
No value
Treatments
No value
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
HAP-1
Hi-C on HAP-1
Preferred Procotol - in situ Hi-C on HAP-1 cells
Enzyme
MboI
Dilution Hi-C
CH12.LX
Hi-C on CH12.LX
dilution Hi-C on CH12.LX with HindIII and bio-dCTP
Enzyme
HindIII
in situ Hi-C
CH12.LX
Hi-C on CH12.LX
Preferred protocol - in situ Hi-C on CH12.LX with MboI and bio-dATP
Enzyme
MboI
Dilution Hi-C
HUVEC cell
Hi-C on HUVEC cell
dilution Hi-C on CC2517 with HindIII and bio-dCTP
Enzyme
HindIII
in situ Hi-C
HUVEC cell
Hi-C on HUVEC cell
in situ Hi-C on CC2517 with MboI and bio-dATP (w/out crosslinking)
Enzyme
MboI
in situ Hi-C
HUVEC cell
Hi-C on HUVEC cell
Preferred protocol - in situ Hi-C on CC2517 with MboI and bio-dATP
Enzyme
MboI
in situ Hi-C
KBM-7
Hi-C on KBM-7
Preferred protocol - in situ Hi-C on KBM7 with MboI and bio-dATP
Enzyme
MboI
in situ Hi-C
K562
Hi-C on K562
in situ Hi-C on K562 with MboI and bio-dATP (higher crosslinker concentration)
Enzyme
MboI
Dilution Hi-C
192627
Hi-C on 192627
dilution Hi-C on 192627 with HindIII and bio-dCTP
Enzyme
HindIII
in situ Hi-C
192627
Hi-C on 192627
Preferred protocol - in situ Hi-C on 192627 with MboI and bio-dATP
Enzyme
MboI
Dilution Hi-C
CC-2551
Hi-C on CC-2551
dilution Hi-C on CC2551 with HindIII and bio-dCTP
Enzyme
HindIII
in situ Hi-C
CC-2551
Hi-C on CC-2551
Preferred protocol - in situ Hi-C on CC2551 with MboI and bio-dATP
Enzyme
MboI
Dilution Hi-C
IMR-90
Hi-C on IMR-90
dilution Hi-C on IMR90 with HindIII and bio-dCTP
Enzyme
HindIII
in situ Hi-C
IMR-90
Hi-C on IMR-90
Preferred protocol - in situ Hi-C on IMR90 with MboI and bio-dATP
Enzyme
MboI
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