Included Properties
Data Type
Sample
Organ/System
Modifications
Treatments
Set Type
Dataset Group
16 Common Properties
Project
4DN
Lab
Jesse Dixon, SALK
Experiment Category
Sequencing
Experiment Type
Hi-C
Dataset
in situ Hi-C on maturing regulatory T cells (Treg)
Organism
Mouse
Sample Type
primary cells
Sample Tier
Unclassified
Sample Category
Primary Cells
Tissue Source
thymus
Publication
Liu Z et al. (2023) PMID:37932264
Assay Details
Enzyme: MboI
Center
OFHHD - Dixon
Status
Released
Commendations
No value
Warnings
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Crispr Ikzf2 enhancer deletion
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Crispr Foxp3 deletion
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Crispr control
Enzyme
MboI
in situ Hi-C
Treg - thymus - Fox3p-GFP+
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Foxp3 KIKO - control
Enzyme
MboI
in situ Hi-C
"wannabe" Treg - thymus - Foxp3-KO
in situ Hi-C on maturing regulatory T cells (Treg)
Treg - Foxp3 KIKO - Foxp3 knockout
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 WT
in situ Hi-C on maturing regulatory T cells (Treg)
Treg DSM - WT control
Enzyme
MboI
in situ Hi-C
Treg - thymus - Foxp3-Thy1.1 DSM
in situ Hi-C on maturing regulatory T cells (Treg)
Treg DSM - Foxp3 domain swap
Enzyme
MboI
- fin -